Oral Presentation 11th Australian Peptide Conference 2015

A RaPID way for the discovery of human hepatocyte growth factor agonists with macrocyclic peptide scaffolds (#65)

Hiroaki Suga 1
  1. The University of Tokyo, Bunkyo-ku, TOKYO, Japan

The genetic code is the law of translation, where genetic information encoded in RNA is translated to amino acid sequence. The code consists of tri-nucleotides, so-called codons, assigning to particular amino acids. In cells or in ordinary cell-free translation systems originating from prokaryotes, the usage of amino acids is generally restricted to 20 proteinogenic (standard) kinds, and thus the expressed peptides are composed of only such building blocks. To overcome this limitation, we recently devised a new means to reprogram the genetic code, which allows us to express non-standard peptides containing multiple non-proteinogenic amino acids in vitro. This lecture will describe the development in the genetic code reprogramming technology that enables us to express natural product-inspired non-standard peptides and pseudo-natural products. The technology involves (1) efficient macrocyclization of peptides, (2) incorporation of non-standard amino acids, such as N-methyl amino acids, and (3) reliable synthesis of libraries with the complexity of more than a trillion members. When the technology is coupled with an in vitro display system, referred to as RaPID (Random non-standard Peptide Integrated Discovery) system as a novel “molecular technology”, the libraries of natural product-inspired macrocycles with a variety ring sizes and building blocks can be screened (selected) against various drug targets inexpensively, less laboriously, and very rapidly. This lecture will focus on discussing the development of Met agonists that function the same as the natural ligand protein, HGF.

  1. K. Ito; K. Sakai; Y. Suzuki; N. Ozawa; T. Hatta; T. Natsume; K. Matsumoto; H. Suga "Artificial human Met agonists based on macrocycle scaffolds" Nature Communications, 6, 6373 (2015)
  2. T. Morioka; N.D. Loik; C.J. Hipolito; Y. Goto; H. Suga "Selection-based discovery of macrocyclic peptides for the next generation therapeutics" Current Opinion in Chemical Biology, 26C, 34-41 (2015)
  3. T. Passioura; H. Suga "Reprogramming the genetic code in vitro" Trends in Biochemical Sciences 39, 400-408 (2014).
  4. K. Torikai; H. Suga "Ribosomal synthesis of an amphotericin-B inspired macrocycle" Journal of the American Chemical Society 136, 17359-17361 (2014).
  5. R. Watanabe, N. Soga, D. Fujita, K.V. Tabata, L. Yamauchi, K.S. Hyeon, D. Asanuma, M. Kamiya, Y. Urano, H. Suga, H. Noji "Arrayed lipid bilayer chambers allow single-molecule analysis of membrane transporter activity" Nature Communications 5, 4519 (2014). doi: 10.1038/ncomms5519
  6. Y. Goto, Y. Ito, Y. Kato, S. Tsunoda, H. Suga “One-pot synthesis of azoline-containing peptides in a cell-free translation system integrated with a posttranslational cyclodehydratase” Chemistry & Biology 21, 766–774 (2014).
  7. Y. Tanaka, C.J. Hipolito, A.D. Maturana, K. Ito, T. Kuroda, T. Higuchi. T. Katoh, H.E. Kato, M. Hattori M, K. Kumazaki, T. Tsukazaki, R. Ishitani, H. Suga, O. Nureki “Structural basis for the drug extrusion mechanism by a MATE multidrug transporter” Nature 496, 247-51 (2013).
  8. Y. Yamagishi, I. Shoji, S. Miyagawa, T. Kawakami, T. Katoh, Y. Goto, H. Suga "Natural product-like macrocyclic N-methyl-peptide inhibitors against a ubiquitin ligase uncovered from a ribosome-expressed de novo library" Chemistry&Biology 18, 1562-1570 (2011).
  9. Y. Goto, T. Katoh, H. Suga “Flexizymes for genetic code reprogramming” Nature Protocols 6, 779-790 (2011)